PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G208100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 218aa    MW: 25221.3 Da    PI: 6.7588
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G208100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.33.6e-5461331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtdeelv++yLk+kv+g ++el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd
  Brast05G208100.1.p   6 LPPGFRFHPTDEELVNYYLKRKVHGLSIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGCRTNRATRAGYWKSTGKD 95 
                         79****************************.99**************84335556888********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++   +++ +g+kktLvfy+grap+g +++Wvmheyr+
  Brast05G208100.1.p  96 RSINY-QKRSIGMKKTLVFYQGRAPQGIRSNWVMHEYRI 133
                         ****9.9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-634157IPR003441NAC domain
PROSITE profilePS5100559.4956156IPR003441NAC domain
PfamPF023653.0E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKVHG LSIELDIIPE VDLYKCEPWE LAEKSFLPSR  60
DPEWYFFGPR DRKYPNGCRT NRATRAGYWK STGKDRSINY QKRSIGMKKT LVFYQGRAPQ  120
GIRSNWVMHE YRIEESECNN TMGIQDSYAL CRVFKKNVPV GEFEKQGECS TSRAKDNQEE  180
VTDFEDAGQS SGAAENDKDN SWMQFIVDDL WCTNKTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-55115712166NO APICAL MERISTEM PROTEIN
1ut4_B2e-55115712166NO APICAL MERISTEM PROTEIN
1ut7_A2e-55115712166NO APICAL MERISTEM PROTEIN
1ut7_B2e-55115712166NO APICAL MERISTEM PROTEIN
3swm_A2e-55115715169NAC domain-containing protein 19
3swm_B2e-55115715169NAC domain-containing protein 19
3swm_C2e-55115715169NAC domain-containing protein 19
3swm_D2e-55115715169NAC domain-containing protein 19
3swp_A2e-55115715169NAC domain-containing protein 19
3swp_B2e-55115715169NAC domain-containing protein 19
3swp_C2e-55115715169NAC domain-containing protein 19
3swp_D2e-55115715169NAC domain-containing protein 19
4dul_A2e-55115712166NAC domain-containing protein 19
4dul_B2e-55115712166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1375963e-79AC137596.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 9 clone OSJNBb0031H05, complete sequence.
GenBankAP0055643e-79AP005564.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1228_C03, complete sequence.
GenBankAP0149653e-79AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126173e-79CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238477.11e-165PREDICTED: NAC domain-containing protein 86-like
SwissprotQ9FFI54e-86NAC86_ARATH; NAC domain-containing protein 86
TrEMBLI1ISL61e-165I1ISL6_BRADI; Uncharacterized protein
STRINGBRADI4G37327.11e-164(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-111NAC domain containing protein 57